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Allowable Deductions on Employees’ Salaries in Kenya: A Guide for 2025

Understanding allowable deductions on employees’ salaries is crucial for both employers and employees in Kenya. These deductions help determine the taxable employment income, ensuring compliance with tax laws while optimizing employee benefits. Below are the key deductions as per Kenyan tax regulations.

1. Affordable Housing Levy

The Affordable Housing Levy is deducted from employees’ salaries in line with the Affordable Housing Act, 2024. This levy supports the government’s initiative to provide affordable housing for Kenyans, ensuring that employed individuals contribute toward homeownership programs.

2. Post-Retirement Medical Fund Contributions

Employees can contribute to a post-retirement medical fund, with deductions capped at Kshs. 15,000 per month. This provision ensures financial security in retirement by covering future medical expenses.

3. Social Health Insurance Fund (SHIF) Contributions

All employees are required to contribute to the Social Health Insurance Fund (SHIF), which replaced the National Health Insurance Fund (NHIF). This fund provides comprehensive health coverage, ensuring access to medical services.

4. Mortgage Interest Deductions

Employees can deduct mortgage interest payments, up to Kshs. 360,000 per year (Kshs. 30,000 per month), when borrowed from one of the first six financial institutions specified in the Fourth Schedule of the Income Tax Act. This deduction applies to mortgage loans used to purchase or improve residential premises occupied by the taxpayer.

5. Pension & Provident Fund Contributions

Contributions to a registered pension or provident fund, or an individual retirement fund, are deductible up to Kshs. 360,000 per year (Kshs. 30,000 per month). This deduction encourages savings for retirement while reducing taxable income.

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Jackie.W. Murage

Associate- Corporate Services

As an Associate-Corporate Services, Jackline leads client relations, helping organizations develop strong corporate strategies. She brings relevant experience in the role of helping clients develop and implement corporate goals and objectives, formulate corporate strategies around their capital resources, achieve optimal strategic mix, and sustain a healthy risks-return balance.

Jackline holds a Bachelor’s Degree in Business Management; Finance and Banking from Maasai Mara University

Diana Kiarie

Manager- Accounts and Financial Reporting

Diana serves as the Manager of Accounts and Financial Reporting and holds a Bachelor’s degree in Commerce with a specialization in Accounting from Mount Kenya University. Additionally, she possesses a diploma in Business Management from the University of Nairobi. Currently pursuing CPA
Advanced Level, Diana has over five years of experience in finance, accounting, audit, and taxation for the firm, significantly enhancing strategic financial management activities.

CPA Gitau Nahashon

Senior Managing Partner

CPA Gitau Nahashon is an accomplished finance and accounting professional with over 21 years of experience in the fields of accounting, tax, audit, advisory, corporate governance, and business consultancy. Nahashon is the founding partner of GK Nahashon & Company, a rapidly growing medium-sized audit firm located in Rosslyn, Limuru Road.

He is a member of the Institute of Certified Public Accountants of Kenya (ICPAK), Kenya Institute of Management (KIM), and the Institute of Internal Auditors Kenya Chapter (IIA). CPA Nahashon is a passionate accountant, financial analyst, tax litigant, and advisor as well as corporate finance advisor. All this emerges from his background of Bachelor of Commerce, Finance, and Accounting as well as his professional training as a Certified Public Accountant (CPA-K) coupled with his many years of hands-on experience. He is a licensed practicing auditor and consultant with the Institute of Certified Public Accountants of Kenya. He is an MS Excel enthusiast having trained several high-ranking finance professionals in financial modeling, forecasting, and reporting using sophisticated Excel functions and formulae.

CPA Nahashon is a certified QuickBooks pro advisor, a position he uses to offer support in QuickBooks online as well as advise clients on the usage of QuickBooks for their accounting, payroll, and inventory management. This certification increases the confidence that clients have in our expertise in automated accounting software.

CPA Nahashon is extremely zealous of compliance, he has worked for several employers and private clients shepherding them to remain compliant with the regulations, policies, and guidelines of various regulators. As a risk and compliance professional, CPA Nahashon has brokered many deals and structured compliance highways for many organizations.

CPA Nahashon has enjoyed a thriving career in the private sector where he served in various capacities within the manufacturing, real estate, educational, and banking sectors. His major accomplishments include overseeing effective system migration, automation of MIS, conducting gap analysis for new CBK guidelines, successful acquisition structure, corporate governance training, financial reporting, training advanced MS Excel, successful audit engagements, setting up a successful microfinance company, several successful funding proposals among others.

This professional accountant has held the hands of many start-ups until they are mature with huge turnovers. He has mid-wifed micro enterprises to become medium-sized entities some of them with balance sheet of over Kshs 1B. He has successfully transitioned chamas to birthing enterprises that are current industry and market leaders.

He has served in various boards of academies, schools, SME’s and serves in advisory board of a thriving business in the service industry. He is currently a board chairman in one of the SME’s he serves as an independent director. He is an astute leader with impeccable people leadership skills and serves the community in several leadership positions transforming lives and offering hope to the destitute.